Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSISNITVYMPSVLTLVGIPGLESVQCWIGIPFCAIYLIAMIG---NSLLLSIIKSERSLHEPLYIFLGMLGATDI-----ALASSIMPKMLGIFWFNVPEIYFDSCLLQMWFIHTLQGIESGILVAMALDRYVAICYPLRHANIFTHQLVIQIGTMVVLRAAILVAPCLVLIK---------CRFQFY--HTTVISHSYCEHMAIVKLAAANVQVNKIYGLFVAFTVAGFDLTFITLSYIQIFITVFRLPQKEARFKAFNTCIAHICVFLQFYLLAFFSFFTHRFGSHISPYIHILFSSIYLLVPPFL-------NPLVYGAKTTQIRIHVVKMFCS |
| 1F88 Chain:A ((44-322)) | -----------------------------------MFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGP-----TGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLV-FTVK-------EAAA----SATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFY-IFTHQ-GSDFGP--------IFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCC |
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General information:
TITO was launched using:
| RESULT:
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Template: 1F88.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -214612 for 1843 contacts (-116.4/contact) +
2D Compatibility (PS) -24860 + (NN) 192 + (LL) 5112
1D Compatibility (HY) -24800 + (ID) 3250
Total energy: -262218.0 ( -142.28 by residue)
QMean score : 0.201
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