Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MERDKPVSVSEFLLLGLSRQPQQQHLLFVFFLSMYLATVLGNLLIILAISIDSRLHTPMYFFLSNMSFVDNCFST-TVPKMLANHILRTQTISFSGCLMQMYFISELADMDNFLLAVMAYDRFVAVCRPLHYTAKMIHQLCALLVTGSWVVANSNALLHTLLM----------ARLSFCADNTIPHIFCDVTPLLKLSCSDTHLSEVMILTEAALVTITPFLCLLASYMHITCVVLR-------VPSTKGR-WKAFSTCGSHLAVVLLFYGTIMSP--------YFRTSSSHSAQRDIAAAVRFTVVTPVMNPLIYSLRNKDIKGALVKVVAVKFFSVQ |
| 2YDO Chain:A ((14-303)) | -------------------------------LAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGVLAIPFAIA--ISTGFCAACHGCLFIACFVLVLTASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKAHSQGCGEGQVACLFEDVVPM-----------NYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLKQMES-------TLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YDO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -223933 for 1948 contacts (-115.0/contact) +
2D Compatibility (PS) -25468 + (NN) -5523 + (LL) 3368
1D Compatibility (HY) -23600 + (ID) 2900
Total energy: -278056.0 ( -142.74 by residue)
QMean score : 0.269
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