Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLGIMAWNATCKNWLAAEAALEKYYLSIFYGIEFVVGVLGNTIVVYGYIFSLKNWNSSNIYLFNLSVSDLAF-LCTLPMLIRSYANGNWIYGDVLCISNRYVLHANLYTSILFLTFISIDRYLIIKYPFREHLLQKKEFAILISLAIWVLVTL-ELLPIL--------PLINPVITDNGTTCNDFASSGDPNYNLIYSMCLTLLGFLIPLFVMCFFYYKIALFLKQRNRQVATALPLEKPLNLVIMAVVIFSVLFTPYHVMRNVRIASRLGSWKQYQCTQVVINSFYIVTRPLAFLNSVINPVFYFLLGDHFRDMLMNQLRHNFKSLTSFSRWAHELLLSFREK |
| 2VT4 Chain:A ((14-298)) | -------------------------MSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPG--CCDFVT------NRAYAIASSIISFYIPLLIMIFVALRVYREAKEQIR-------EHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNR----------DLVPDWLFVAFNWLGYANSAMNPIIYCRSPD---------FRKAFKRLLA--------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VT4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -209596 for 1920 contacts (-109.2/contact) +
2D Compatibility (PS) -26143 + (NN) -2701 + (LL) 6028
1D Compatibility (HY) -24400 + (ID) 3550
Total energy: -260362.0 ( -135.61 by residue)
QMean score : 0.277
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