Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MITFLPIIFSILIVVTFVIGNFANGFIALVNSIEWFKRQKISFADQILTALAVSRVGLLWVLVLNWYATELNPAFNSIEVRITAYNVWAVINHFSNWLATSLSIFYLLKIANFSNLIFLHLKRRVKSVVLVILLGPLLFLVCHLFVINMNQIIWTKEYEGNMTWKIK--LRS---AMYLSNTTVTILANLVPFTLTLISFLLLICSLCKHLKKMQLHGKGSQDPSMKVHIKALQTVTSFLLLCAIYFLSIIMSVWSFES---------LENKPVFMFCEAIAFSYPSTHPFILIWGNKKLKQTFLSVLWHVRYWVKGEKPSSS |
| 2LNL Chain:A ((38-322)) | ----NKYVVIIAYALVFLLSLLGNSLVMLVILYSR---VGRSVTDVYLLNLALADLLFALTLPIWA-ASKVNGWIFGTFLCKVVSLLKEVNFYSGILLLACISVDRYLAIV---HATRTL-T-QKRHLVKFVCLGCWGLSMNLSLPFFLFRQAY--HPNNSSPVCYEVLGNDTAKWRMVLRILPHTFGFIVPLFVMLFCYGFTLRTLFKAHMG----------QKHRAMRVIFAVVLIFLLCWLPYNLVLLADTLMRTQVIQESCERRNNIGRALDATEILGFLHSCLNPIIYAFIGQNFRHGFLKILAMHG----------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2LNL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -176349 for 1964 contacts (-89.8/contact) +
2D Compatibility (PS) -26673 + (NN) -968 + (LL) 2308
1D Compatibility (HY) -13600 + (ID) 1950
Total energy: -217232.0 ( -110.61 by residue)
QMean score : 0.210
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