Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LEMSCIQNLLPCKPYLPGTEPPPPVCCLPLKDMVA-----H--QAQCLCSALANPDLLKDF-NVTMDGALKLAKTCGASVDMSVCKNGNH
1SIY Chain:A ((7-78))
-----QGNLAQCIGFLQKGGVVPPSCCTGVKNILNSSRTTADRRAVCSC--LKAA--AGAVRGINPNNAEALPGKCGVNIP---------
General information:
TITO was launched using:
RESULT:
Template:
1SIY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32354 for 432 contacts (-74.9/contact) +
2D Compatibility (PS) -6742 + (NN) -5449 + (LL) 936
1D Compatibility (HY) -3600 + (ID) 850
Total energy: -48059.0 ( -111.25 by residue)
QMean score : 0.326
(partial model without unconserved sides chains):
PDB file :
Tito_1SIY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SIY-query.scw
PDB file :
Tito_Scwrl_1SIY.pdb
: