Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKVRTVGKSAKKFVTGVIHIRATFNNTFINVTDVQGNTLYQTSVGAHGFSGSRKSTPYAAGKASEVAAKTAIEKFGMKVVSVIIRGPGFGTEAAVKALQSCGLTVTSIADKTAISHNGCRLRKKRRV
4K0K Chain:K ((2-116))
-----------RQVASGRAYIHASYNNTIVTITDPDGNPITWSSGGVIGYKGSRKGTPYAA-QLAALDAAKKAMAYGMQSVDVIVRGTGAGREQAIRALQASGLQVKSIVDDTPVPHNGCRPKKKFRK
General information:
TITO was launched using:
RESULT:
Template:
4K0K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48226 for 867 contacts (-55.6/contact) +
2D Compatibility (PS) -12978 + (NN) -7576 + (LL) 708
1D Compatibility (HY) -4800 + (ID) 2600
Total energy: -75472.0 ( -87.05 by residue)
QMean score : 0.568
(partial model without unconserved sides chains):
PDB file :
Tito_4K0K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4K0K-query.scw
PDB file :
Tito_Scwrl_4K0K.pdb
: