Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGSKSAFNSLDPALLYKGDLLRRMLFTLIALICYRLGTYVPIPGINLDIINDIFPKEGAGIFGVFNLFSGGALARMTILVLNVMPYIVASIVMQLLSSAVKGINEVKN-DGELGRRRMNSYIRYMTIVFCIFQSVTILIGLERMNREGT-LVVIEPGVMFRTVGIFSLLGGTMFLIWLGEQISASGIGNGISLIIFTGIISELHNAFSFLLTLN--KNGSMSLLIILFVFVLFFLLLLLIIFVESSYRKVTVQYPKKQFKRLHS-DDFTYIPLKINLSGVIPTIFANAILLTPVSIANFYKGHAFSDFILNYFMANKVVYIAAYLALIVFFNFFYTNFIFNPEENADFLKKNGGFIPGRRPGKHTSDYLQDIVFKLTFIGSAYLVVICTVPEVMRYYYDMPFIFGGTSLLIIVNVTTDTIMQIQSYIFSNRYDSWIKKYESKTKKLR |
| 3DL8 Chain:G ((8-428)) | -------------LFELKELRQKFIFTLLMFVIYRLGSHIPIPGIN---------------FALYDIFSGGNLGRLTVFALGVMPYISASIMMQLLTVAIPSLQRLAKEEGDYGRYKINEYTKYLTLFVATVQSLGIAFWIRGQVSPKGIPVVENPGISFILITVLTLVAGTMFLVWIADRITEKGIGNGASLIIFAGIVANFPNAVIQFYEKVKTGD--IGPLTLLLIIALIIAIIVGIVYVQEAERRIPIQYPGRQVGRQLYAGRKTYLPIKINPAGVIPIIFAQALLLIPSTLLNFVQNPF-IKVIADMFQPGAIFYNFLYVTFIVFFTYFYTAVLINPVELAENLHKAGAFIPGVRPGQDTVKYLERIINRLIFFGALFLSVIALIPILISVWFNIPFYFGGTTALIVVGVALDTFRQIETYLIQKKYKSYVR---------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3DL8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -271780 for 2781 contacts (-97.7/contact) +
2D Compatibility (PS) -40280 + (NN) 5901 + (LL) 1720
1D Compatibility (HY) -54000 + (ID) 1450
Total energy: -359889.0 ( -129.41 by residue)
QMean score : 0.053
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