Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNNAIKLNSIFTELSKKKKPKLIGRGIGCGKGKTSGRGHKGQKARSGTSING-FEGGQQSIYTRLPKRGFNPIRRNICSIINVGDVQRLIEAKKIE--KNSVIDKEILHKLGFIKSIKDKIKLLNKGKLNERCVFHVDFASEAAKKSVTSIGGSVEILS
2ZJP Chain:I ((4-140))
-------HDLKPTPGSRKDRKRVGRGPG-GTDKTAGRGHKGQKSRSGAGKGAFFEGGRSRLIARLPKRGFN----------NVGTTYEVVKLSQLQDLEDTTFDRDTLEAYRLVRRKNRPVKLLASGEISRAVTVHVDAASAAAIKAVEAAGGRVVLPE
General information:
TITO was launched using:
RESULT:
Template:
2ZJP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 12188 for 670 contacts (18.2/contact) +
2D Compatibility (PS) -13698 + (NN) -466 + (LL) 1516
1D Compatibility (HY) -5200 + (ID) 2650
Total energy: -8310.0 ( -12.40 by residue)
QMean score : 0.246
(partial model without unconserved sides chains):
PDB file :
Tito_2ZJP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ZJP-query.scw
PDB file :
Tito_Scwrl_2ZJP.pdb
: