Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSKKRKRPQSGKIDRVDC---------LEKLGKENT-TFLSSIAMGSIGQLAIPIP-----GVG-VLIGGFVGGVMSKTFYDVSLTIFKEAKLARQRRIEIEKECRESIRQLEMYQNQFNEVFERYFHGTIKFFNESFDELERALCAGDADLAIAVNNKIQEGMGQELLFDNKQECWEFITSRKEGWNFITSRGKTEI |
1FDV Chain:A ((72-154)) | VAAARERVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGLPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAFMEKVLGSPEEVLDRTDIHTFHRFYQYLALSKQVFREAAQNPEEVAEVFLTALRAPKPTLRYFTTERFLPLLRMRLDD |
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General information:
TITO was launched using:
| RESULT:
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Template: 1FDV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -10262 for 297 contacts (-34.6/contact) +
2D Compatibility (PS) -7035 + (NN) 142 + (LL) 0
1D Compatibility (HY) -6000 + (ID) 1250
Total energy: -24405.0 ( -82.17 by residue)
QMean score : 0.128
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