Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VNNPKPCEWKSNELSRGYIADYKAFNFVDGEGVRCSLY-VSGCPFHCEGCYNKAAQSF-----KYGKPYTKELEDDILKDIGHESVQGLTLLGGEPFLNTATCLSIVKRIRATYGETKDIWSWTGYTWDEMMQETADKLELLSLIDVLVDGRFEQKLFDPNLAFRGSSNQRIIDVQKSLAAGEVVLYEL
1TV8 Chain:A ((12-162))
------------------------------PIRDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMRRD-LDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQ--KLYDAGLRRINVSLDAIDDT-LFQSIN-NRNIKATTILEQIDYATSIGLNV---
General information:
TITO was launched using:
RESULT:
Template:
1TV8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47527 for 1056 contacts (-45.0/contact) +
2D Compatibility (PS) -15539 + (NN) -6415 + (LL) 1848
1D Compatibility (HY) -3200 + (ID) 1250
Total energy: -72083.0 ( -68.26 by residue)
QMean score : 0.356
(partial model without unconserved sides chains):
PDB file :
Tito_1TV8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TV8-query.scw
PDB file :
Tito_Scwrl_1TV8.pdb
: