Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --------MDWRKTQMIFIV-----------TLLIL-----NVFLA-----VIFFNKQL------SDDPDTLGNETLEERLKADN-ISHPDLST--KPTSGSIFTTER-AAFTTKDVSDLTGQAITLKDNNKQIYSVLQTPVKAGK-KGSNPEFQKFMESDVYRGESYQFWNYDKDARTLTF-NQLINNNMVLFDEAGQITFYLDQDDRVISYEQTWMSKQD-------------DLKDKTNLMSATDALEAVYQHGELKQDSDVVSATF--------GYYTTVQLPSGN-----------VYFPVWCFEVKHSGETNYVLVNAKDEQVINQSENKSTTEPGAELSSRQKAK--------------------------------- |
| 3FHC Chain:A ((9-405)) | IPEREMKDFQFRALKKVRIFDSPEELPKERSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLAD----GSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQINWESWLLEDSSRAELPVTDKSDDSLPMGVVVDYTNAPVLMLLSTDGVLCPFYMIN |
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General information:
TITO was launched using:
| RESULT:
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Template: 3FHC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 25900 for 1961 contacts (13.2/contact) +
2D Compatibility (PS) -28691 + (NN) 253 + (LL) 212
1D Compatibility (HY) -13200 + (ID) 2700
Total energy: -18226.0 ( -9.29 by residue)
QMean score : 0.183
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