Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LLSNKQTVLCIEEMAKMFPAAHCELVHKNTFELLVAVVLSAQCTDVLVNRVTASLFEKYHSPEDYLAVPLEELMEDIRSIGLYRNKAKNIQGLSEKILTEFNGEVPKTHAELESLPGVGRKTANVVLSVGFGVPAIAVDTHVERISKR-LGICRWKDSVVEVEETLKRKLPKELWSDA------------HHYMIFFGRYHCKARNPECPTCPLLYLCREGKKQAKVRGFDG
1MUD Chain:A ((26-208))
-------------------------IDKTPYKVWLSEVMLQQTQVATVIPYFERFMARFPTVTDLANAPLDEVLHLWTGLGYYA-RARNLHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLSLGKHFPILNGNVKRVLARCYAVSGWPG---------KKEVENKLWSLSEQVTPAVGVERFNQAMMDLGAMICTRSKPKCSLCPLQNGC--------------
General information:
TITO was launched using:
RESULT:
Template:
1MUD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73360 for 1259 contacts (-58.3/contact) +
2D Compatibility (PS) -18216 + (NN) -10206 + (LL) 4100
1D Compatibility (HY) -12000 + (ID) 2250
Total energy: -111932.0 ( -88.91 by residue)
QMean score : 0.429
(partial model without unconserved sides chains):
PDB file :
Tito_1MUD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MUD-query.scw
PDB file :
Tito_Scwrl_1MUD.pdb
: