Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKIVILIISLLLLVGIGFGVYYFKNANHIGADVSYIKITTDGEKGKNVSFNYSYTMPAYDEAGKETEVTFSADKNLR-KGAYLKLYIKEDKGVTSYEEVPEKEVPSKAAEKLK
4GAI Chain:A ((31-96))
--------------------------------------------QGPNVNLEEKFSMSFVQ--GEESNDKIPVALGLKEKNLYLSCVLKDDKPTLQLESVDPKNYPKKKMEK--
General information:
TITO was launched using:
RESULT:
Template:
4GAI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 13485 for 308 contacts (43.8/contact) +
2D Compatibility (PS) -6873 + (NN) -1378 + (LL) 4084
1D Compatibility (HY) -4800 + (ID) 1000
Total energy: 3518.0 ( 11.42 by residue)
QMean score : 0.260
(partial model without unconserved sides chains):
PDB file :
Tito_4GAI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GAI-query.scw
PDB file :
Tito_Scwrl_4GAI.pdb
: