Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNLLLKCKDKKVKAFTLLEMLVVLIIISVLLLLFVPNLSKQKESVTRTGNAAVVKVVESQAELFELQETGRKASLSTLKSGGYITEKQEKAYLDYYKDSSNGSQKISS
2M3K Chain:A ((2-35))
----------------------------------------SEFEKAKINAVRAALLENAHFMEKFYLQNGRFKQTSTKWPSLPIKEAEGFCIRLNGIARGALDSKFMLK
General information:
TITO was launched using:
RESULT:
Template:
2M3K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 6525 for 141 contacts (46.3/contact) +
2D Compatibility (PS) -3731 + (NN) -1616 + (LL) 4672
1D Compatibility (HY) 800 + (ID) 350
Total energy: 6300.0 ( 44.68 by residue)
QMean score : 0.383
(partial model without unconserved sides chains):
PDB file :
Tito_2M3K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2M3K-query.scw
PDB file :
Tito_Scwrl_2M3K.pdb
: