Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAQAQYAGTGRRKNAVARVRLVPGTGKITINKKDVEEYIPHADLRLVINQPFAVTSTQGSYDVFVNVVGGGYAGQSGAIRHGISRALLEVDPDFRDSLKRAGLLTRDARMVERKKPGLKKARKASQFSKR
4DUZ Chain:I ((3-128))
----QYYGTGRRKEAVARVFLRPGNGKVTVNGQDFNEYFQGLVRAVAALEPLRAVDALGHFDAYITVRGGGKSGQIDAIKLGIARALVQYNPDYRAKLKPLGFLTRDARVVERKKYGKHKARRAPQYSKR
General information:
TITO was launched using:
RESULT:
Template:
4DUZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36609 for 890 contacts (-41.1/contact) +
2D Compatibility (PS) -12978 + (NN) 1072 + (LL) 616
1D Compatibility (HY) -7200 + (ID) 3250
Total energy: -58349.0 ( -65.56 by residue)
QMean score : 0.471
(partial model without unconserved sides chains):
PDB file :
Tito_4DUZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DUZ-query.scw
PDB file :
Tito_Scwrl_4DUZ.pdb
: