Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MFKKIILSIATIAATASLAVSVQASEKVELKVATDSDTAPFTYQK-DGKFKGYDVDVVKAVFKGSKYKVTFKTVPFDTISTGIDAGKFDLSANDFSYNKERAEKYLFSDPISRSNYAVVGKKGSHYKSLSDLSGKSTEVLSGVNYAQVLENWNKNHPNKKPIKIKYVSGTTGVTSRLKNIESGKIDFILYDAISSDYIVK---DQSLNLSVSPLKGKIGNNKDGLEYLLLPKDKKGKTLQKFINKRIKVLKENGTLARLSKQYFGGDYVSNIDK |
4KPT Chain:A ((29-247)) | --------------------------TV--KIASDSSYAPFEFQNGQKKWVGIDVDIMQEVAKINDWKLEMSYPGFDAALQNLKAGQVDGIIAGMTITDERKETFDFSNPYYTSALTIATTKDSKLSDYSDLKGKAV----GAKNGTAAQTWLQENQKKYGYTIKTYSDGVHMFAAL---SSGNIAGAMDEVPVISYAMKQGQDLAMNFPSISLPGGYG---------FAVMKGKNSTLVDGFNKALAEMKSNGDYDKILKKYGITA------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4KPT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -46970 for 1722 contacts (-27.3/contact) +
2D Compatibility (PS) -23133 + (NN) -8366 + (LL) 4184
1D Compatibility (HY) -11200 + (ID) 3150
Total energy: -88635.0 ( -51.47 by residue)
QMean score : 0.391
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