Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MYKDDSLTLHTDLYQINMMQVYFNKGIHNKRAVFEAYFRKVPFENGYAVFAGLERIVRYLENLSFSDSDLSYLEEL-GYPEEFLDYLKNLKMEL-TVKSAKEGDLVFANEPLVQIEGPLAQCQLVETAILNIINYQTLVA-----TK-AAR---------IRS---VI--EDEPLLEFGTRRAQEM---DAAIWGTRAAIIGGANATSNVRAGKIFNIPVSGTHAHALVQTYG--------DDYQAFKAYAETHKD--CVFLVDTYDTLRVGVPNAIRVAKEMGEKINFLGVRLDSGDLAYLSKKVRQQLDDAGFP--NAKIYASNDLDENTILNLKM--QKAKIDVWGVGTKLITAYDQ-PALGAVYKIVSIETDAGSMRDTIKLSNNAEKVSTPGKKQVWRITSRAKGKSEGDYITFADTDVTQLDEIEMFHPTYTYINKTVRDFDAVPLLVDIFDKGKLVYQLPSLQEIQEYGRKEFDQLWDEYKRVLNPQDYPVDLARDVWQNKMDLIDRIRKEALAKGEVR |
1YIR Chain:A ((15-394)) | ------NLLDTDFYKLTMMQAVLHNYP-NAEVEWEFRCRNQED--LRLYLPAIREQLEYLAGLAISDEQLAFLERIPFLAPDFIRFLGLFRFNPRYVQTGIE-----NDEFFLRLKGPWLHVILFEVPLLAMISEVRNRARYPAATVEQARERLQEKFDWLRREASAEELAGFKMADFGTRRRFSYRVHEAVVSGLKEDFPGCFVGTSNVHLARKLDLKPLGTMAHEWLMAHQQLGPRLIDSQSAALDCWVREYRGLLGIALTDCITTDAF-LRDFDLYFA-----KLFDGLRHDSGDPLLWAEKTIAHYLKLGIDPLTKTLVFSDGLDLPRALKIYRALQGRINVSFGIGTHFTCDLPGVEPMNIVVKMSACNG-----HPVAKISDTP-------PDFIHYLKHVFQV-------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1YIR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -126926 for 2656 contacts (-47.8/contact) +
2D Compatibility (PS) -35337 + (NN) -8423 + (LL) 9036
1D Compatibility (HY) -17200 + (ID) 3750
Total energy: -182600.0 ( -68.75 by residue)
QMean score : 0.476
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