Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSKFDSQKIITPI-MKFVNMRGIIALKDGMLAILPLTVVGSLFLILGQLPFKGLNQAIANVFGPEWTEPFMQVYSGTFA-IMGLISCFAIAYAYAKNSSVEPL-PAGVLSLSSFFILMKSSYIPV-KGEAIAD-AISKVWFGGQGIIGAIIIGLVVGAIYT-WFIQHHIV-IKMPEQVPQAIAKQFEAMIPAFVIFLLSMIVYLIAKVTTGGTFIEMIYDIIQVPLQGLTGSLYGAIGIAFFISFLWWFGVHGQSVVNGIVTALLLSNLDANKSLLAANRLTLDNGAHIVTQQFLDSFLILSGSGITFGLVIAMLFAAKSKQYKALGKVAAFPAIFN-VNEPIVFGFPIVMNPVMFLPFILVPVLAALIVYGAIAV-GFMQPFSGVTLPWSTPAIISGFMVGGWQGALVQIVILAISTAVYFPFF---KIQDNITYKNECEMERG |
| 1MDO Chain:A ((9-384)) | ----DFLPFSRPAMGAEELAAVKTVLDSGWITT--------------GPKNQELEAAFCRLTG---NQYAVAVSSATAGMHI-------------------ALMALGIGEGDEVIT-------PSMTWVSTLNMIVLL------------------GANPVMVDVDRDTLMVT-PEHIEAAITPQTKAIIPVHYAGAPADLDAIYALGERYG--IPVIEDAAHATGTSYKGRHIGARGTAIFS----FHAIKNITCAEG---GIVVTD---NPQFADKLRSLKFHG--LGVDQAEVLAPGYKYNLPDLNAAIALAQLQKLDALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRVDEARCGITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIAG |
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General information:
TITO was launched using:
| RESULT:
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Template: 1MDO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -388218 for 3005 contacts (-129.2/contact) +
2D Compatibility (PS) -36610 + (NN) 835 + (LL) 7052
1D Compatibility (HY) 9200 + (ID) 2650
Total energy: -410391.0 ( -136.57 by residue)
QMean score : 0.128
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