Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MIRNEFYNQLINSEPIGFIDPFTDLGEFDSIQMKFKQPVRNLVNKYSGKPYNLSWQNKIEQMRVLYIKYQKSLKLEDEEQEVHNRVKNKKSKKYVHEIVTTYLKLGFRFKEIEARV-SLFNTRLRRNWKRSDYVTTDNPEFYLKKDLQNGYCSPNSFLPRSMKIN |
1GV2 Chain:A ((59-99)) | -----------------------------------------------------------------------------------------WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRR------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1GV2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -5717 for 233 contacts (-24.5/contact) +
2D Compatibility (PS) -4134 + (NN) -789 + (LL) 6788
1D Compatibility (HY) -400 + (ID) 350
Total energy: -4602.0 ( -19.75 by residue)
QMean score : 0.574
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