Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLYFPSISEETFDFEADWLVKAMDDNQKRILFVGQGKNGDL---ELELNYQD-NPEPFDNLSVGELVQLPKELFVVPETISYQPQYECF
2VB2 Chain:X ((21-71))
------------------VVKGIDLESKKITIHHD-PIAAVNWPEMTMRFTITPQTKMSEIKTGDKVAFNFVQQGNLSLLQDIKVSQ--
General information:
TITO was launched using:
RESULT:
Template:
2VB2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11731 for 230 contacts (-51.0/contact) +
2D Compatibility (PS) -4875 + (NN) -2163 + (LL) 1388
1D Compatibility (HY) -3600 + (ID) 400
Total energy: -21381.0 ( -92.96 by residue)
QMean score : 0.423
(partial model without unconserved sides chains):
PDB file :
Tito_2VB2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VB2-query.scw
PDB file :
Tito_Scwrl_2VB2.pdb
: