Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKMKKWFGLLFLGLALITLAACGQKTPEDIIKTELKDSYVGYSENPGSDYPFND---GDDVLTFNKKENSITNSQGQMTYFSVIPKEEVPAGTQRVIDELETKLKGTNNFTIIINSTVKNPTKKDSEGAYQIALSDSGKAIRIFELGREPRSFGYYDFSGKAK |
3LI8 Chain:A ((211-274)) | ----------------------GEKSLSDFDVEEIKNAASDIREGIGGHVEIKDPITGKTVIMFYEPVKT-----GDFSFVLVVPKEEMLA------------------------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3LI8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 17900 for 358 contacts (50.0/contact) +
2D Compatibility (PS) -6305 + (NN) -1422 + (LL) 6356
1D Compatibility (HY) -4400 + (ID) 900
Total energy: 11229.0 ( 31.37 by residue)
QMean score : 0.302
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