Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYLEQLKEVNPLTICITNNVVKNFTANGLLALGASPAMSECIEDLEDLLKVANALLINIGTLTKESWQLYQEAIKIANKNQVPVVLDPVAAGASRFRLEVSLDLLKNYSISLLRGNGSEIAALVG-EKQASKGADGGK-VADLESIAVKANQVFDVPVVVTGETDAIAVRGEVRLLQNGSPLMPLVTGTGCLLGAVLAAFIGSSDRSDDLACLTEAMTVYNVSGEIAEKVAKGKGVGSFQVAFLDALSQMKSEMIMDK
1ESJ Chain:C ((22-274))
--LTAVRRHSPLVHSITNNVVTNFTANGLLALGASPVMAYAKEEVADMAKIAGALVLNIGTLSKESVEAMIIAGKSANEHGVPVILDPVGAGATPFRTESARDIIREVRLAAIRGNAAEIAHTVGVTDWLIKGVDAGEGGGDIIRLAQQAAQKLNTVIAITGEVDVIADTSHVYTLHNGHKLLTKVTGAGSLLTSVVGAFCAVEE--NPLFAAIAAISSYGVAAQLAAQQTADKGPGSFQIELLNKLSTVTEQDVQEW
General information:
TITO was launched using:
RESULT:
Template:
1ESJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -199266 for 2252 contacts (-88.5/contact) +
2D Compatibility (PS) -27008 + (NN) -8403 + (LL) 372
1D Compatibility (HY) -13200 + (ID) 5300
Total energy: -252805.0 ( -112.26 by residue)
QMean score : 0.553
(partial model without unconserved sides chains):
PDB file :
Tito_1ESJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ESJ-query.scw
PDB file :
Tito_Scwrl_1ESJ.pdb
: