Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTKTIFESKTEGNWFLGSFQAFNYFTCFGNDESYEAIQDVFHRLLSTLKVEGLQLHVVQMTSDFQLLAFLVDMINQEYSRHIKVTQHKGAILVSEDDQLFLVHLPKEGTSLEKFFDLKNDNNFGDTILIATHNEGKTKEFRELFGKLGLKVENLNDYPDLPEVEETGMTFEENARLKAETISKLTGKMVISDDSGLKVDALGGLPGVWSARFSGPDATDARNNAKLLHELAMVFDKERRSAQFHTTLVVSAPNKESLVVEAEWPGYIGTEPKGENGFGYDPLFIVGEGSRTAAELSAQEKNNLSHRGQAVRKLMEVFPKWQLEN |
| 2CAR Chain:A ((7-189)) | ---------------------------------------------------------------------------------------------------------------------------GKKIVFVTGNAKKLEEVVQILGD-KFPCTLVAQKIDLPEYQ--GEPDEISIQKCQEAVRQVQGPVLV-EDTCLCFNALGGLPGPYIKWFL------EKLKPEGLHQLLAGFEDKSAYALCTFALSTGDPSQPVRLFRGRTSGRI-VAPRGCQDFGWDPCFQPDGYEQTYAEMPKAEKNAVSHRFRALLELQEYFGSLAA-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2CAR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -18701 for 1412 contacts (-13.2/contact) +
2D Compatibility (PS) -19595 + (NN) -5014 + (LL) 9068
1D Compatibility (HY) -9600 + (ID) 2700
Total energy: -46542.0 ( -32.96 by residue)
QMean score : 0.400
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