Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKISEEEVRHVANLSKLRFSDQETKEFASSLSKIVDMIELLNEVDTEGVPVTTT-----MADRKTVMREDIAQPGNNRDDLFKNVPQHQDYYIKVPAILEDGGDA
1R0V Chain:A ((62-117))
-------------------------DFSTYYFVYEDLRDRGNKVKIQGEFLLTKKPYLPISERKTIRMEEIAEKARNFDELRLAVVDEESEITYFRVYEPDMMGE
General information:
TITO was launched using:
RESULT:
Template:
1R0V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6150 for 218 contacts (-28.2/contact) +
2D Compatibility (PS) -5574 + (NN) -1423 + (LL) 2208
1D Compatibility (HY) -1600 + (ID) 750
Total energy: -13289.0 ( -60.96 by residue)
QMean score : 0.325
(partial model without unconserved sides chains):
PDB file :
Tito_1R0V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1R0V-query.scw
PDB file :
Tito_Scwrl_1R0V.pdb
: