Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAQQRRGGFKRRKKVDYIAANKIEYVDYKDTELLSRFVSERGKILPRRVTGTSAKNQRKVTTAIKRARVMALMPYVNED
4DR4 Chain:R ((33-84))
--------------------------DYRNVEVLKRFLSETGKILPRRRTGLSAKEQRILAKTIKRARILGLLPFTEKL
General information:
TITO was launched using:
RESULT:
Template:
4DR4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -12163 for 296 contacts (-41.1/contact) +
2D Compatibility (PS) -5471 + (NN) -1489 + (LL) 2248
1D Compatibility (HY) -4800 + (ID) 1450
Total energy: -23125.0 ( -78.12 by residue)
QMean score : 0.503
(partial model without unconserved sides chains):
PDB file :
Tito_4DR4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DR4-query.scw
PDB file :
Tito_Scwrl_4DR4.pdb
: