Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIYKVFYQETKERNPRREQTKTLYVTIDAANELEGRIAARKLVEENTAYNIEFIELLSDKHLEYEKETGVFELTEF
1XMQ Chain:G ((85-123))
------YQVPMEVSPRRQQSLALRWLVQAANQRPERRAAVRIAHELMDAAEGKGGAVKKKEDVERMAEANRAYAHY
General information:
TITO was launched using:
RESULT:
Template:
1XMQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 11279 for 173 contacts (65.2/contact) +
2D Compatibility (PS) -4003 + (NN) 1819 + (LL) 892
1D Compatibility (HY) -400 + (ID) 750
Total energy: 8837.0 ( 51.08 by residue)
QMean score : 0.241
(partial model without unconserved sides chains):
PDB file :
Tito_1XMQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XMQ-query.scw
PDB file :
Tito_Scwrl_1XMQ.pdb
: