Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDAFADVAKMKKIKEDIKSHEGQMVELTLENGRKREKNKIGRLIEVYPSLFIVEYKDTAAVPGAIDNTYVESYTYSDILTEKTLIRYFDDESAE
3JB9 Chain:D ((6-38))
---------------KLLHETQGHIVTMELENGS----TYRGKLIEAEDNMNCQMRDISVTARDGRVSHLDQVYIRGSHIRFLIVPDMLRNAPMF
General information:
TITO was launched using:
RESULT:
Template:
3JB9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -131 for 136 contacts (-1.0/contact) +
2D Compatibility (PS) -3420 + (NN) 15 + (LL) 1784
1D Compatibility (HY) -1600 + (ID) 500
Total energy: -3852.0 ( -28.32 by residue)
QMean score : 0.389
(partial model without unconserved sides chains):
PDB file :
Tito_3JB9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3JB9-query.scw
PDB file :
Tito_Scwrl_3JB9.pdb
: