Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHSEQSASIEHVDVLIVGAGISGTGAAYYLKTMQPAKTFAIVEA-----------RYPAIRSDSDLHTFSYEFKP-----WQHEKATASADAIMVHRGRSLAGGDRTLRHRRTRHHELRMVIIGSGATAVTLVPAMAQTAGAVTMPK
4AP1 Chain:A ((23-111))
------------DVVVVGAGIAGLYAIHRFRSQ--GLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYATQPEILAY---------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4AP1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17068 for 355 contacts (-48.1/contact) +
2D Compatibility (PS) -6588 + (NN) 2351 + (LL) 4660
1D Compatibility (HY) -3200 + (ID) 1200
Total energy: -21045.0 ( -59.28 by residue)
QMean score : 0.273
(partial model without unconserved sides chains):
PDB file :
Tito_4AP1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4AP1-query.scw
PDB file :
Tito_Scwrl_4AP1.pdb
: