Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDIISDGIYNLIIFVLAVYVGYHVVWNVTPALHTPLMAVTNAISAIVIVGAMLAAALTVTPLGKAMGTLAVALAAVNVFGGFLVTRRMLEMFKKKAPKAGGH
1LDD Chain:A ((801-811))
-------------------------------------------------------------------------------------HSFLKITVPKD------
General information:
TITO was launched using:
RESULT:
Template:
1LDD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 587 for 30 contacts (19.6/contact) +
2D Compatibility (PS) -1230 + (NN) -1075 + (LL) 7888
1D Compatibility (HY) -800 + (ID) 100
Total energy: 5270.0 ( 175.67 by residue)
QMean score : 0.199
(partial model without unconserved sides chains):
PDB file :
Tito_1LDD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LDD-query.scw
PDB file :
Tito_Scwrl_1LDD.pdb
: