Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTQAFTVVIPARYASTRLPGKPLQDIAGQPMIQRVWNQARKSAA-SRVVVATDDERILAACQGFGAEALLTRAEHNSGTDRLEEVASRLGLASDAIVVNVQGDEPLIPPALIDQVAANLAAHPEAAIATLAEPIHEVSALFNPNVVKVATDIDGLALTFSRAPLPWARDAFARDRDSLPEGVPYRRHIGIYAYRVGFLADFVAWGPCWLENAESLEQLRALWHGVRIHVADARENMLPGVDTPEDLERVRRVLGG
1H7H Chain:A ((5-238))
------IVIPARYGSSRLPGKPLLDIVGKPMIQHVYERALQVAGVAEVWVATDDPRVEQAVQAFGGKAIMTRNDHESGTDRLVEVMHKV---EADIYINLQGDEPMIRPRDVETLLQGMRDDPALPVATLCHAISAAEAA-EPSTVKVVVNTRQDALYFSRSPIPYPRNA---------EKARYLKHVGIYAYRRDVLQNYSQLPESMPEQAESLEQLRLMNAGINIRTFEVAATG-PGVDTPACLEKVRALMA-
General information:
TITO was launched using:
RESULT:
Template:
1H7H.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -124347 for 1831 contacts (-67.9/contact) +
2D Compatibility (PS) -25977 + (NN) -15902 + (LL) 1324
1D Compatibility (HY) -18000 + (ID) 5300
Total energy: -188202.0 ( -102.79 by residue)
QMean score : 0.432
(partial model without unconserved sides chains):
PDB file :
Tito_1H7H.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1H7H-query.scw
PDB file :
Tito_Scwrl_1H7H.pdb
: