Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSEPIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELG-LGPALAATAIP-THELRYIDQSGATVWSEPRGV--EAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIE-ERDGRVLIGARDGHGKPQALGADVLVGADGIHSAVRAHLHPDQ------------------RPLSHG----GITMWRGVTEFDRFLDGKTMIVANDEHWSRLVAYPISARHAAEGKSLVNWVCMVPSAAVGQLDNEADWNRDGRLEDVLPFFADWDLGWFDIRDLLTRNQLILQYPMVDRDPLPHWGRGRITLLGDAAHLMYPMGANGASQAILDGIELAAALARNADVAAALREYEEARRPTANKIILANREREKEEWAAASRPKTEKSAALEAITGSYRNQVERPR |
| 4JY3 Chain:A ((16-339)) | --------VAGGGFAGLTAAIALKQNGW-DVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYE----------TWMHNKSVSKETFNGLPWRIMTRSHLHDALVNRARA-LG---VDISVNSEAVAADPVGRLTLQT------GEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGLIRLIVPRMKKELGHGEWDNTIDMWNFWPRVQRILYSP---CNENELYLGLMAPAADPRGSSVPIDLEVWVEMFPF-----------------LEPCL----------IEAAKLKT-----ARYDKYETTKLDSWTRGKVALVGDAAHAMCPALAQGAGCAMVNAFSLSQDLEEGSSVEDALVAWETRIRPITDRC----------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4JY3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -157710 for 2466 contacts (-64.0/contact) +
2D Compatibility (PS) -31906 + (NN) -11542 + (LL) 6684
1D Compatibility (HY) -22400 + (ID) 5100
Total energy: -221974.0 ( -90.01 by residue)
QMean score : 0.376
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