Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDLLSALTLETWVLLAVVLVLLYGFGTRTHGLFKKQGIPGPKPLPFFGTVLNYYMGLWKFDVECHKKYGKIWGLFDGQMPLFAITDTEMIKNVLVKECFSVFTNRRDFGPVGIMGKAVSVAKDEEWKRYRALLSPTFTSGRLKEMFPIIEQYGDILVK---YLKQEAETGKPVTMKKVFGAYSMDVITSTSFGVNVDSL-NNPKDPFV--------EKTKKLLRFDFFDPLFLSVVLFPFLTPIYEMLNICMFPKDSIEFFKKFVYRMKETRLDSVQKHRVDFLQLMMNAHNDSKDKESHTALSDMEITAQSIIFIFAGYEPTSSTLSFVLHSLATHPDTQKKLQEEIDRALPNKAPPTYDTVMEMEYLDMVLNETLRLYPIGNRLERVCKKDVEINGVF-MPKGSVVMIPSYALHRDPQHWPEP-EEFRPERFSKENKGSIDPYVYLPFGNGPRNCIGMRFALMNMKLALTKVLQNFSFQPCKETQIPLKLSRQGLLQPTKPIILKVVPRDEIITGS |
| 4HGF Chain:A ((79-434)) | ---------------------------------------------------------------------------------------------------------RDFAGDGL---ATSWTHEKNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWERLNADEHIEVPEDMTRL----TLDTIGLCGFNYRFNSFYRDQPHPFITSMVRALDEKM-------------DE--------------NKRQFQED-IKVMNDLVDKIIADRKASGEQSD-DLLAHMLNG----KDPETGEPLDDENIRYQIITFLIAGHETTSGLLSFALYFLVKNPHVLQKAAEEAARVLVDPV-PSYKQVKQLKYVGMVLNEALRLWPTAPAFSLYAKEDTVLGGEYPLEKGDELMVLIPQLHRDKTIWGDDVEEFRPERF--ENPSAIPQHAFKPFGNGQRACIGQQFALHEATLVLGMMLKHFDFEDHTNYELDIK--------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4HGF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -133559 for 2461 contacts (-54.3/contact) +
2D Compatibility (PS) -35430 + (NN) -19960 + (LL) 12224
1D Compatibility (HY) -19600 + (ID) 5700
Total energy: -202025.0 ( -82.09 by residue)
QMean score : 0.300
|
|
|