Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
NLYQFKNMIHCTVPSRPWWHFADYGCYCGRGGKGTAVDDLDRCCQVHDNCYGEAEKL-GCWPYLTLYKYECSQGKLTCSGGNNKCEAAVCNCDLVAANCFAGAPYIDANYNVNLKERCQ
3JTI Chain:A ((1-118))
NLYQFKNMIQCTVPSRSWADFADYGCYCGKGGSGTPVDDLDRCCQTHDNCYNEAENISGCRPYFKTYSYECTQGTLTCKGDNNACAASVCDCDRLAAICFAGAPYNDANYNIDLKARC-
General information:
TITO was launched using:
RESULT:
Template:
3JTI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -75679 for 868 contacts (-87.2/contact) +
2D Compatibility (PS) -12691 + (NN) -6723 + (LL) 120
1D Compatibility (HY) -13600 + (ID) 4300
Total energy: -112873.0 ( -130.04 by residue)
QMean score : 0.424
(partial model without unconserved sides chains):
PDB file :
Tito_3JTI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3JTI-query.scw
PDB file :
Tito_Scwrl_3JTI.pdb
: