Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTLLLLAVIMIFGLLQAHGNLVNFHRMIKLTTGKEAALSYGFYGCHCGVGGRGSPKDATDRCCVTHDCCYKRLEKRGCGTKFLSYKFSNSGSRITCAKQDSCRSQLCECDKAAATCFARNKTTYNKKYQYYSNKHCRGSTPRC
1C1J Chain:A ((1-122))
--------------------HLLQFRKMIKKMTGKEPVVSYAFYGCYCGSGGRGKPKNATDRCCFVHDCCYEKVT--GCDPKWDDYTYSWKNGTIVCGGDDPCKKEVCECDKAAAICFRDNLKTYKKRYMAYPDILCSSKSEKC
General information:
TITO was launched using:
RESULT:
Template:
1C1J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34255 for 905 contacts (-37.9/contact) +
2D Compatibility (PS) -13231 + (NN) -8994 + (LL) 2592
1D Compatibility (HY) -12400 + (ID) 3050
Total energy: -69338.0 ( -76.62 by residue)
QMean score : 0.398
(partial model without unconserved sides chains):
PDB file :
Tito_1C1J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1C1J-query.scw
PDB file :
Tito_Scwrl_1C1J.pdb
: