Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLLLPLPLLLFLLCSRAEAGEIIGGTECKPHSRPYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHCAGRSITVTLGAHNITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACSHFRDFDHNLQLCVGNPRKTKSAFKGDSGGPLLCAGVAQGIVSYGRSDAKPPAVFTRISHYRPWINQILQAN
2RDL Chain:A ((1-226))
---------------------IIGGTECRPHARPYMAYLEIVTPENHLSACSGFLIRRNFVMTAAHCAGRSITVLLGAHNKKVKEDTWQKLEVEKQFPHPKYDDRLVLNDIMLLKLKEKANLTLGVGTLPISAKSNSIPPGRVCRAVGWGRTNVNEPPSDTLQEVKMRILDPQACKHFEDFHQEPQLCVGNPKKIRNVYKGDSGGPLLCAGIAQGIASYVLRNAKPPSVFTRISHYRPWINKILREN
General information:
TITO was launched using:
RESULT:
Template:
2RDL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -171776 for 1949 contacts (-88.1/contact) +
2D Compatibility (PS) -24294 + (NN) -8919 + (LL) 2096
1D Compatibility (HY) -23200 + (ID) 8000
Total energy: -234093.0 ( -120.11 by residue)
QMean score : 0.728
(partial model without unconserved sides chains):
PDB file :
Tito_2RDL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RDL-query.scw
PDB file :
Tito_Scwrl_2RDL.pdb
: