Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPIPNNPGAGENAFDPVFVNDDDGYDLDSFMIPAHYKKYLTKVLVPNGVIKNRIEKLAYDIKKVYNNEEFHILCLLKGSRGFFTALLKHLSRIHNYSAVETSKPLFGEHYVRVKSYCNDQSTGTLEIVSEDLSCLKGKHVLIVEDIIDTGKTLVKFCEYLKKFEIKTVAIACLFIKRTPLWNGFKADFVGFSIPDHFVVGYSLDYNEIFRDLDHCCLVNDEGKKKYKATSL
1CJB Chain:C ((2-231))
-PIPNNPGAGENAFDPVFVNDDDGYDLDSFMIPAHYKKYLTKVLVPNGVIKNRIEKLAYDIKKVYNNEEFHILCLLKGSRGFFTALLKHLSRIHNYSAVETSKPLFGEHYVRVKSYCNDQSTGTLEIVSEDLSCLKGKHVLIVEDIIDTGKTLVKFCEYLKKFEIKTVAIACLFIKRTPLWNGFKADFVGFSIPDHFVVGYSLDYNEIFRDLDHCCLVNDEGKKKYKATSL
General information:
TITO was launched using:
RESULT:
Template:
1CJB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -203089 for 1872 contacts (-108.5/contact) +
2D Compatibility (PS) -24671 + (NN) -10965 + (LL) 208
1D Compatibility (HY) -37200 + (ID) 11500
Total energy: -287217.0 ( -153.43 by residue)
QMean score : 0.804
(partial model without unconserved sides chains):
PDB file :
Tito_1CJB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1CJB-query.scw
PDB file :
Tito_Scwrl_1CJB.pdb
: