Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKPNVAIIVAALKPALGIGYKGKMPWRLRKEIRYFKDVTTRTTKPNTRNAVIMGRKTWESIPQKFRPLPDRLNIILSRSYENKI--IDDNIIHASS-------IESSLNLVSDVERVFIIGGAEIYNELINNSLVSHLLITEIEHPSPESI--EMDTFLK-----------------FPLESWTKQPKSELQKFVGDTVLEDDIKEGDFTYNYTLWTRK
3EEJ Chain:A ((3-217))
--KVPVVGIVAALLPEMGIGFQGNLPWRLAKEMKYFREVTTLTNDNSKQNVVIMGRKTWESIPQKFRPLPKRINVVVSRSFDGELRKVEDGIYHSNSLRNCLTALQSSLANENKIERIYIIGGGEIYRQSMD--LADHWLITKI-MPLPETTIPQMDTFLQKQELEQRFYDNSDKLVDFLPSSIQLEGRLTSQEWNGELVKGLPVQEKGYQFYFTLYTKK
General information:
TITO was launched using:
RESULT:
Template:
3EEJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -111841 for 1330 contacts (-84.1/contact) +
2D Compatibility (PS) -19762 + (NN) -2151 + (LL) 176
1D Compatibility (HY) -19200 + (ID) 4450
Total energy: -157228.0 ( -118.22 by residue)
QMean score : 0.542
(partial model without unconserved sides chains):
PDB file :
Tito_3EEJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3EEJ-query.scw
PDB file :
Tito_Scwrl_3EEJ.pdb
: