Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRSRRVDVMDVMNRLILAMDLMNRDDALRVTGEVREYIDTVKIGYPLVLSEGMDIIAEFRKRFGCRIIADFKVADIPETNEKICRATFKAGADAIIVHGFRGADSVRACLNVAEEMGREVFLLTEMSHPGAEMFIQGAADEIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVGAQGGDPGETLRFADAIIVGRSIYLADNPAAAAAGIIESIKDLLNP
3NQD Chain:A ((8-226))
-------VMDVMNRLILAMDLMNRDDALRVTGEVREYIDTVKIGYPLVLSEGMDIIAEFRKRFGCRIIADFKVADIPETNEKICRATFKAGADAITVHGFPGADSVRACLNVAEEMGREVFLLTEMSHPGAEMFIQGAADEIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVGAQGGDPGETLRFADAIIVGRSIYLADNPAAAAAGIIESIKDLL--
General information:
TITO was launched using:
RESULT:
Template:
3NQD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -187177 for 1916 contacts (-97.7/contact) +
2D Compatibility (PS) -23518 + (NN) -5814 + (LL) 376
1D Compatibility (HY) -31200 + (ID) 10850
Total energy: -258183.0 ( -134.75 by residue)
QMean score : 0.822
(partial model without unconserved sides chains):
PDB file :
Tito_3NQD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NQD-query.scw
PDB file :
Tito_Scwrl_3NQD.pdb
: