Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLVEGSELQSGAQQPRTEAPQHGELQYLRQVEHIMRCGFKKEDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEELLWFIKGSTNAKELSSKGVRIWDANGSRDFLDSLGFSARQEGDLGPVYGFQWRHFGADYKDMDSDYSGQGVDQLQKVIDTIKTNPDDRRIIMCAWNPKDLPLMALPPCHALCQFYVVNGELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLQPGDFVHTLGDAHIYLNHIEPLKIQLQREPRPFPKLRILRKVETIDDFKVEDFQIEGYNPHPTIKMEMAV
4E28 Chain:A ((38-323))
-------------------PPHGELQYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEELLWFIKGSTNAKELSSK-------------------------DLGPVYGFQWRHF----------YSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPRDLPLMALPPCHALCQFYVVNSELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQREPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEM--
General information:
TITO was launched using:
RESULT:
Template:
4E28.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -175158 for 1939 contacts (-90.3/contact) +
2D Compatibility (PS) -26828 + (NN) -13843 + (LL) 2564
1D Compatibility (HY) -38000 + (ID) 11800
Total energy: -263065.0 ( -135.67 by residue)
QMean score : 0.629
(partial model without unconserved sides chains):
PDB file :
Tito_4E28.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4E28-query.scw
PDB file :
Tito_Scwrl_4E28.pdb
: