Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AFYKREMFDPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFIIQACRGNQHDVPVIPLDVVDNQTEKLDTNITEVDAASVYTLPAGADFLMCYSVAEGYYSHRETVNGSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVSQRRVDFCKDPSAIGKKQVPCFASMLTKKLHFFPKSN
4HVA Chain:A ((8-254))
-------FDPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFIIQACRGNQHDVPVIP-----------------------YTLPAGADFLMCYSVAEGYYSHRETVNGSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVSQRRVDFCKDPSAIGKKQVPCFASMLTKKLHFFPK--
General information:
TITO was launched using:
RESULT:
Template:
4HVA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -153974 for 1899 contacts (-81.1/contact) +
2D Compatibility (PS) -25441 + (NN) -7424 + (LL) 2404
1D Compatibility (HY) -36400 + (ID) 11900
Total energy: -232735.0 ( -122.56 by residue)
QMean score : 0.435
(partial model without unconserved sides chains):
PDB file :
Tito_4HVA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4HVA-query.scw
PDB file :
Tito_Scwrl_4HVA.pdb
: