Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MANGYTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQAQTFDYSEIPNFPESTVPGHAGRLVFGILNGRACVMMQGRFHMYEGYPFWKVTFPVRVFRLLGVETLVVTNAAGGLNPNFEVGDIMLIRDHINLPGFSGENPLRGPNEERFGVRFPAMSDAYDRDMRQKAHSTWKQMGEQRELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRVFGFSLITNKVIMDYESQGKANHEEVLEAGKQAAQKLEQFVSLLMASIPVSGHTG
2QPL Chain:A ((1-282))
--NGYTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQAQTFDYSEIPNFPE----GHAGRLVFGILNGRACVMMQGRFHMYEGYPFWKVTFPVRVFRLLGVETLVVTNAAGGLNPNFEVGDIMLIRDHINLPGFSGENPLRGPNEERFGVRFPAMSDAYDRDMRQKAHSTWKQMGEQRELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRVFGFSLITNKVIMDY------------EAGKQAAQKLEQFVSLLMASIPV-----
General information:
TITO was launched using:
RESULT:
Template:
2QPL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -198368 for 2283 contacts (-86.9/contact) +
2D Compatibility (PS) -28625 + (NN) -16147 + (LL) 924
1D Compatibility (HY) -39600 + (ID) 13300
Total energy: -295116.0 ( -129.27 by residue)
QMean score : 0.735
(partial model without unconserved sides chains):
PDB file :
Tito_2QPL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QPL-query.scw
PDB file :
Tito_Scwrl_2QPL.pdb
: