Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LVLGKTLGEGEFGKVVKATAFHL-KGRAGYTT-VAVKMLKENASPSELRDLLSEFNVLKQV-NHPHVIKLYGACSQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEMKLVHRDLAARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIPPERLFNLLKTGHRMERPDNCSEEMYRLMLQCWKQEPDKRPVFADISKDLEKMMVKRRDYL
3C4F Chain:A ((15-296))
LVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPP--------------------EEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVA------
General information:
TITO was launched using:
RESULT:
Template:
3C4F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -164103 for 2062 contacts (-79.6/contact) +
2D Compatibility (PS) -28838 + (NN) -12237 + (LL) -468
1D Compatibility (HY) -32400 + (ID) 7550
Total energy: -245596.0 ( -119.11 by residue)
QMean score : 0.569
(partial model without unconserved sides chains):
PDB file :
Tito_3C4F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3C4F-query.scw
PDB file :
Tito_Scwrl_3C4F.pdb
: