Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAQRQPHSPNQTLISITNDTESSSSVVSNDNTNKGWSGDNSPGIEALCAIYITYAVIISVGILGNAILIKVFFKTKSMQTVPNIFITSLAFGDLLLLLTCVPVDATHYLAEGWLFGRIGCKVLSFIRLTSVGVSVFTLTILSADRYKAVVKPLERQPSNAILKTCVKAGCVWIVSMIFA-LPEAIFSNVYTFRDPNKNMTFES--CTSYPVSKKLLQEIHSLLCFLVFYIIPLSIISVYYSLIARTLYKSTLNIPTEEQSHARKQIESRKRIAR------TVLVLVALFALCWLPNHLLYLYHSFTSQTYVDPSAMHFIFTIFSRVLAFSNSCVNPFALYWLSKSFQKHFKAQL-FCCKAERPEPPVADTSLTTLAVMGTVPGTGSIQMSEISVTSFTGCSVKQAEDRF |
| 2Y02 Chain:A ((19-300)) | ------------------------------------------------------ALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLP--IMMHWWRDEDPQALKCYQDPGCCDFVTNRA--------------YAIASSIISFYIPLLIMIFVALRVYREAKEQ--------SRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDLVPD-----WLFVAFNW-LGYANSAMNPI-IYCRSPDFRKAFKRLLA------------------------------------------------------ |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2Y02.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -182735 for 1921 contacts (-95.1/contact) +
2D Compatibility (PS) -25816 + (NN) 1600 + (LL) 8256
1D Compatibility (HY) -29200 + (ID) 4100
Total energy: -231995.0 ( -120.77 by residue)
QMean score : 0.288
|
|
|