Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MPFPNCSAPSTVVATAVGVLLGLECGLGLLGNAVALWTFLFRVRVWKPYAVYLLNLALADLLLAACLPFLAAFYLSLQAWHL-GRVGCWALHFLLDLSRSVGMAFLAAVALDRYLRVVHPRLKVNLLSPQAALGVSGLVWLLMVALTCPGLL-----ISEAAQNSTRCHSFYSRADGSFSIIWQEALSCLQFVLPFGLIVFCNAGIIRALQKRLREPEKQPKLQRAQALVTLVVVLFALCFLPCFL--ARVLMHIFQNLGSCRALCAVAHTSDVTGSLTYLHSVLNPVVYCFSSPTFRSSYRRVFHTLRGKGQAAEPPDFNPRDSYS |
| 3C9L Chain:A ((50-315)) | --------------------------LGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFG-GFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVA-FTWVMALACAAPPLVGWSRYIPEGMQCSCGI-DYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMT----IPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNDDE-------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3C9L.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -227674 for 2005 contacts (-113.6/contact) +
2D Compatibility (PS) -27112 + (NN) -16836 + (LL) 2156
1D Compatibility (HY) -25600 + (ID) 3350
Total energy: -298416.0 ( -148.84 by residue)
QMean score : 0.321
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