Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MEGEPSQPPNSSWPLSQNGTNTEATPATNLTFSSYYQHTSPVAAMFIVAYALIFLLCMVGNTLVCFIVLKNRHMHTVTNMFILNLAVSDLLVGIFCMPTTLVDNLITGWPFDNATCKMSGLVQGMSVSASVFTLVAIAVERFRCIVHPFREK--LTLRKALVTIAVIWALALLIMCPSAVTLTVTREEHHFMVDARNRSYPLYS---CWEAWPEKGMRRVYTTVLFSHIYLAPLALIVVMYARIARKLCQAPGPAPGGEEAADPRASR----RRARVVHMLVMVALFFTLSWLPLWALLLLIDYGQLSAPQLHLVTVYAFPFAHWLAFFNSSANPIIYGYFNENFRRGFQAAFRARLCPRPSGSHKEAYSERPGGLLHRRVFVVVRPSDSGLPSESGPSSGAPRPGRLPLRNGRVAHHGLPREGPGCSHLPLTIPAWDI |
2Y00 Chain:A ((19-296)) | --------------------------------------------------ALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALV--------SFLPIMMHWWRDEDPQALKCYQDPGC----CDFVTNRAYAIASSIISFYIPLLIMIFVALRVYR---EAKEQ------------SRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNR------DLVPDWLFVAFNWLGYANSAMNPIIYCR-SPDFRKAFKRLLA------------------------------------------------------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2Y00.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -246411 for 1926 contacts (-127.9/contact) +
2D Compatibility (PS) -27020 + (NN) -14195 + (LL) 6264
1D Compatibility (HY) -23600 + (ID) 3850
Total energy: -308812.0 ( -160.34 by residue)
QMean score : 0.331
|
|
|