Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | METSSPRPPRPSSNPGLSLDARLGVDTRLWAKVLFTALYALIWALGAAGNALSAHVVLKARAGRAGRLRH----HVLSLALAGLLLLLVGVPVELYSFVWFHYPWVFGDLGCRGYYFVHELCAYATVLSVAGLSAERCLAVCQPLRARSLLTPRRTRWLVALSWAASLGLA-LPMAVIMGQKHELETADGEPEPASRVCTVLVSRTALQVFIQVNVLVSFVLPLALTAFLNGVTVSHLLALCSQVPSTSTPGSSTPSRLELLSEEGLLSFIVWKKTFIQGGQVSLVRHKDVRRIRSLQRSVQVLRAIVVMYVICWLPYHARRLMYCY----VPDDAWTDPLYNFYHYFYMVTNTLFYVSSAVTPLLYNAVSSSFRKLFLEAVSSLCGEHHPMKRLPPKPQSPTLMDTASGFGDPPETRT |
| 2Y04 Chain:A ((17-295)) | -------------------------------------LMALVVLLIVAGN-----VLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVV--RGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPG---CCDFVTNRAYAI---ASSIISFYIPLLIMIF---VALRVYREAKEQ------------SRVMLMRE-----------------------HK----------ALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDLVPD------------WLFVAFNWLGYANSAMNPIIY-CRSPDFRKAFKRLLA------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2Y04.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -193718 for 1886 contacts (-102.7/contact) +
2D Compatibility (PS) -26643 + (NN) -8980 + (LL) 6880
1D Compatibility (HY) -26800 + (ID) 3950
Total energy: -253211.0 ( -134.26 by residue)
QMean score : 0.315
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