Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTNTSSSDFTLLGLLVNSEAAGIVFTVILAVFLGAVTANLVMIFLIQVDSRLHTPMYFLLSQLSIMDTLFICTTVPKLLADMVSKEKIISFVACGIQIFLYLTMIGSEFFLLGLMAYDCYVAVCNPLRYPVLMNRKKCLLLAAGAWFGGSLDGFLLTPITMNVPYCGSRSINHFFC-EIPAVLKL----ACADTSLYETLMYICCVLMLLIPISIIS----TSYSLILLTIHRMPSAEGRK---------KAFTTCSSHLTVVSIFYGAAFYTYVLPQSFHTPEQDKVVSAFYTI--VTPMLNPLIYSLRNKDVIGAFKKVFACCSSAQKVATSDA |
| 4AMJ Chain:A ((5-300)) | -------------LLSQQWEAGMSLLMALVVLL-IVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFL--PIMM-----------HWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVYREAKEQ-----------SRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDLVPDWLFVAFNWLGYANSAMNPIIYC-RSPDFRKAFKRLLA------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4AMJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -251300 for 1911 contacts (-131.5/contact) +
2D Compatibility (PS) -26473 + (NN) -2923 + (LL) 2224
1D Compatibility (HY) -20800 + (ID) 3400
Total energy: -302672.0 ( -158.38 by residue)
QMean score : 0.275
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