Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLPSNITSTHPAVFLLVGIPGLEHLHAWISIPFCFAYTLALLGNCTLLFIIQADAALHEPMYLFLAMLATIDLVLSSTTLPKMLAIFWFRDQEINFFACLVQMFFLHSFSIM----ESAVLLAMAFDRYVAICKPLHYTTVLTGSLITKIGMAAVARAVTLMTPL-----PFLLRRFHYCRG--PVIAHCYCEHMAVVRLACGDTSFNNIYGIAVAM--FIVVLDLLFVILSYVF-----ILQAVLQLASQEARYKAFGTCVSHIGAILSTYT----PVVISSVMHRVARH-AAPRVHILLA-IFYLLFPPMVNPIIYGVKTKQIREYVLSLFQRKNM |
| 4LDL Chain:A ((197-447)) | ----------------------------------------VFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCE----FWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKN---------KARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEE------TCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQ---KFALKE--HKALKT----LGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYV--NSGFNPLIYCRSPDFRIAFQELLCL---- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4LDL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -190333 for 1504 contacts (-126.6/contact) +
2D Compatibility (PS) -22495 + (NN) -6828 + (LL) 7216
1D Compatibility (HY) -23600 + (ID) 3700
Total energy: -239740.0 ( -159.40 by residue)
QMean score : 0.251
|
|
|