Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDPQNYSLVSEFVLHGLCTSRHLQNFFFIFFFGVYVAIMLG---NLLILVTVISDPCLHSSPMYFLLGNLAFLDMWLASFATPKMIRDFLSDQKLISFGGCMAQIFFLHFTGGAEMVLLVSMAYDRYVAICKPLHYMTLMSWQTCIRLVLASWVVGFVHSISQVAFT-VNLPYCGPNEVDSFFCDLPLVIKLAC-MDTYVLGIIMISDSGLLSLSC--FLLLLI---------SYTVILLAIRQRAAGSTSKALSTCSAHIMVVTLFF--------GPCIFVYVRPFSRFS-VDKLLSVFYTIFTPLLNPIIYTLRNEEMKAAMKKLQNRRVTFQ |
| 2PED Chain:A ((51-318)) | -------------------------------------IMLGFPINFLTLYVTVQHKKLRT-PLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKP----------------MSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPL |
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General information:
TITO was launched using:
| RESULT:
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Template: 2PED.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -203736 for 1819 contacts (-112.0/contact) +
2D Compatibility (PS) -23935 + (NN) 1009 + (LL) 4928
1D Compatibility (HY) 3200 + (ID) 1200
Total energy: -219734.0 ( -120.80 by residue)
QMean score : 0.156
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