Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MQAVDNLTSAPGNTSLCTRDYKITQVLFPLLYTVLFFVGLITNGLAM---RIFFQIRSKSNFIIFLKNTVISDLLMILTFPFKILSDAK--LGTGPLRTFVCQVTSVIFYFTMYISISFLGLITIDRYQKTTRPFKTSNPKNLLGAKILSVVIWAFMFLLSLPNMILTNRQPRDKNVKKCSFLKSEFGLVWHEIVNYICQVIFW--INFLIVIVCYTLITKELYRSYVRTRGVGKVPR--KKVNVKVFIIIAVFFICFVPFHFARIPYTLSQTRDVFDCTAENTLFYVK-ESTLWLTSLNACLDPFIYFFLCKSFRNSLISMLKCPNSATSLSQDNRKKEQDGGDPNEETPM |
| 4RWD Chain:A ((128-406)) | ------------------------------LYSAVCAVGLLGNVLVMFGIVRYTKMKTATNIYIF--NLALADALATSTLPFQ---SAKYLMETWPFGELLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRTPAKAKLINICIWVLASGVGVPIMVMAVTRPRDGAV-VCMLQFPSPSWYW-DTVTKICVFLFAFVVPILIITVCYGLMLLRLR-SVRLLSGSKEKDRSLRRITRMVLVVVGAFVVCWAPIHIFVIVWTL------VDIDRRDPLVVAALHLCIALGYANSSLNPVLYAFLDENFKRCFRQLC----------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4RWD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -197219 for 1995 contacts (-98.9/contact) +
2D Compatibility (PS) -26622 + (NN) 320 + (LL) 3236
1D Compatibility (HY) -26400 + (ID) 3850
Total energy: -250535.0 ( -125.58 by residue)
QMean score : 0.161
|
|
|